Unsupported Syntax

tinyhgvs recognizes a number of HGVS syntax families that are not yet modeled for successful parsing in the current release. When one of these families is detected, the parser raises a structured error:

Python: TinyHGVSError.code
Rust: ParseHgvsError.code

All unsupported diagnostic codes exposed by tinyhgvs begin with the prefix unsupported.. For readability, the tables below show only the category suffix.

The tables below track syntax families by molecule type. Rows with - in the Supported since column are still unsupported in the current release. Rows with a version number are retained to show when a previously cataloged syntax family became supported.

Each row shows one representative example. Additional examples are grouped in the collapsible sections below each table.

DNA

Diagnostic code category	Biology category	Representative example	Supported since
`allele`	DNA allele	`NC_000001.11:g.[123G>A;345del]`	`-`
`uncertain_range`	DNA range-uncertain edit	`NC_000023.10:g.(33038277_33038278)C>T`	`-`
`dna_repeat`	DNA repeated sequence	`NC_000014.8:g.123CAG[23]`	`0.2.0`
`telomeric_position`	DNA telomeric coordinate	`NC_000023.11:g.pter_qtersup`	`-`
`epigenetic_edit`	DNA epigenetic edit	`NC_000011.10:g.1999904_1999946\|gom`	`-`
`cdna_offset_anchor`	UTR-anchored intron edit	`NM_001385026.1:c.-666+629C>T`	`-`

More examples

alleleuncertain_rangetelomeric_positioncdna_offset_anchor

NC_000001.11:g.[123G>A];[345del]
NC_000023.11:g.33344590_33344592=/dup

NC_000023.11:g.(31060227_31100351)_(33274278_33417151)dup
NC_000023.11:g.(?_31120496)_(33339477_?)del

NC_000002.12:g.pter_8247756delins[NC_000011.10:g.pter_15825266]

ENSG00000050628.16(ENST00000351052.5):c.*24-12888C>T
ENST00000440857.1:c.-490-342_-490-341del

RNA

Diagnostic code category	Biology category	Representative example	Supported since
`allele`	RNA allele	`LRG_199t1:r.[76a>u;103del]`	`-`
`rna_special_state`	RNA special-state outcome	`NM_004006.3:r.?`	`-`
`rna_uncertain_position`	RNA uncertain insertion	`NM_004006.2:r.(222_226)insg`	`-`
`rna_repeat`	RNA repeated sequence	`NM_004006.3:r.-124_-123[14]`	`0.2.0`
`rna_splicing_outcome`	RNA uncertain splicing	`NC_000023.11(NM_004006.2):r.spl`	`-`
`rna_adjoined_transcript`	RNA adjoined transcript	`NM_002354.2:r.-358_555::NM_000251.2:r.212_*279`	`-`

More examples

allelerna_special_staterna_splicing_outcomerna_adjoined_transcript

NM_004006.3:r.[123c>a;345del]
NM_004006.3:r.[123c>a];[345del]

NM_004006.3:r.(1388g>a)
NM_004006.3:r.0
NM_004006.3:r.spl

NC_000023.11(NM_004006.2):r.[897u>g,832_960del]
NC_000023.11(NM_004006.2):r.?

NM_152263.2:r.-115_775::aggcucccuugg::NM_002609.3:r.1580_*1924

Protein

Diagnostic code category	Biology category	Representative example	Supported since
`allele`	Protein allele	`NP_003997.1:p.Val7=/del`	`-`
`protein_frameshift`	Protein frameshift	`NP_0123456.1:p.Arg97fs`	`-`
`protein_extension`	Protein extension	`NP_003997.2:p.Met1ext-5`	`-`
`protein_repeat`	Protein repeated sequence	`NP_0123456.1:p.Ala2[10]`	`0.2.0`
`protein_insertion_payload`	Unknown/truncating protein insertion	`p.Arg78_Gly79insXaa[23]`	`-`
`protein_uncertain_consequence`	Protein uncertain consequence	`p.(Gly719Ala^Ser)`	`-`

More examples

alleleprotein_frameshiftprotein_extensionprotein_insertion_payloadprotein_uncertain_consequence

LRG_199p1:p.Trp24=/Cys
NP_003997.1:p.[(Ser73Arg;Asn103del)]

p.(Gln576SerfsTer21)
p.(Lys210GlnfsTer11)

p.(Ter157Lysext*90)
p.Ter327ArgextTer?

NP_060250.2:p.Gln746_Lys747ins*63
NP_003997.1:p.(Val582_Asn583insXaa[5])

NP_003997.1:p.(Gly56Ala^Ser^Cys)